Wednesday, March 16, 2011

Second (sort of) Comment on Homologous Legs

Lesson for all: Don't use bare assertions to accuse someone of making them.

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"No matter how much evidence and arguments are given in contradiction to irreducible
complexity, he still claims it is?"

Making a claim without substantiating it so...

"Logical Fallacy Fail!"

QED
http://en.wikipedia.org/wiki/Proof_by_assertion
http://en.wikipedia.org/wiki/Bare_assertion_falla...

If you're going to claim Behe simply wrote two books based around bare assertion alone, then
at least give specific examples. Then the irony of your comment won't be as apparent.
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Comment on the Definition and Nature of Irreducible Complexity

 This is continued from my last comments in the previous post. Because I'm dealing with a lot of stuff related to how Irreducible Complexity is defined (as well as misdefined), these comments require a separate post altogether.

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drs said: "Perhaps my understanding of "Irreducibly Complex" is incorrect..."

While it's not a total misunderstanding, I think it misses the point.

"...but I thought the concept meant that certain systems are too complex to have evolved."

Here's a good starting point on this subject:

Primer: Irreducible Complexity in a Nutshell

And in case you have some beef with the mousetrap example because an intelligent agent
can modify the parts to get a one-piece system (in which the analogy would no longer apply to
 features in question), see the following:

A Mousetrap Defended: Response to Critics
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Tuesday, March 15, 2011

My First (Really???) Comment on Uncommon Descent

I have followed this blog every once and a while but until a friend took the initiative for me, I was never sure about whether or not I should take part in any of the discussions on UD.

Can't believe this is my first comment there...

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For several years now, I have considered joining a site like this. A friend finally registered me
saying I could use the fresh air, so I guess that settles it.

I would say more but to keep under the radar there’s a limit to what I can say for now. I’ll just
state right now that I’m honored to be a part of a community like this - period.

In terms of physics, I think front-loading should almost universally be the default view for
anyone in the ID camp. So far as we can tell, such constraints have remained the same since
 the singularity.

What I do in my reasoning is I try and take a minimalist view on apparent intervention;
meaning that I start with the assumption that everything is front-loaded. From there I look for
 examples that place a limitation on how far this can go (abiogenesis for instance).

For this reason I totally agree with that last paragraph of yours, life and physics (along with
 chemistry) are in an entirely different class when it comes to the efficacy of front-loading
explanations. Unlike laws, the constituents of life depend on more than just pure existence
to achieve their purpose.

This reminds me of the “Humpty Dumpty” dilemma that Jonathan Wells has highlighted in
the past. Break a cell membrane so the contents leak, and you no longer have a living cell
despite the presence of organic materials.

I think this gives us a clue as to where we can draw the line on front-loading. Simply ask
yourself, “Does the presence of a given law, element, or some set of circumstances allow for
 living systems to thrive or does there appear to be something else added to the picture for
 this to happen?”

As an example, Meyer has repeated countless times the fact that DNA and it’s chemical
 properties by itself cannot arrange into anything functional, hence front-loading loses it’s
 potential in the origins of life.
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First Comments on Homologous Legs

A few years ago I figured it would be a matter of time before this blog would end up on Scienceblogs. While that hasn't happened, it seems like the teen turned young undergrad has scored the next best thing

MENTAL NOTE: Always take a moment to read the blog in question before giving it any kind of feedback...

Aside from the first two comments, this is the main one where I highlight my biggest criticism of the post in question, as well as Homologous Legs in general...

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"Charged rhetoric, bold sweeping conclusions and cursory analysis? Where have I heard those
things before? Surely not from Casey Luskin, the King of Bloated Rhetoric! My irony meter
melted."

Interesting...

"It’s not “outlandish rhetoric” if it’s true."

"Again, it’s not outlandish if it’s true."

"It’s descriptive and rather accurate, I think."

"I see no outlandish rhetoric here."

"...but, again, it’s hardly outlandish."

"Nothing bad here, just accurate and calm descriptors of Behe’s definitions. Note that the
authors do spend the majority of the paper backing up these specific claims, so they’re
hardly throwaway lines used for argumentative purposes only." (how?)

"It’s emotive and not all that defensible, but again, not outlandish by any stretch of the
imagination."

"Again, that’s rather light stuff. Nothing to get worked up over."
http://en.wikipedia.org/wiki/Proof_by_assertion
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Comments on "Michael Behe Hasn't Been Refuted on the Flagellum"

 Lately there seems to be a lot on ENV regarding Irreducibility and the Flagellum mainly because of a recent Quarterly Review of Biology Paper which Casey Luskin mentions here.

I've been waiting for posts like this for such a long time, particularly because I'm tired of hearing the same dead straw man over and over again which I will cover soon.

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I'm glad to see a post like this. Surprised at how the straw man Ken Miller first formulated is still
alive and well though.


If anything, the only criticism that doesn't receive enough attention from either side of the
debate is Matzke's Evolution in Brownian Space. I think me and Casey would agree on this,
namely that while Miller and many others tend to flatly misrepresent what Behe actually tries to
argue, Matzke at least tries to make responses that keep Behe in original context.


Bookmarking this as one of the better posts on Irreducibility. In a moment though, there's a few
things that need to be said about Miller's argument because it's so prevalent. I'll get to that in a
moment...
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Here's my second comment replying to Nick Matzke:

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There's a lot that needs to be asked and said in this area...

Nick Said: "And that most of the required proteins have known alternative functions in
nonflagellar systems. Oh well."

You mean this?

"Flagellum evolution in Nature Reviews Microbiology"

I would really like to know the rationale behind using Default BLAST search settings to come
to the conclusion that you did. Exactly how similar are these homologies you present and how
 would we know each flagellar protein came about from the homologies and not vice-versa?
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Saturday, March 5, 2011

Fifth/Sixth Comment and more on ENV - Reply to CRW

ieshttp://www.evolutionnews.org/2011/02/lobbyists_resort_to_myth-infor044241.html

I will digitally sign the comments on this post once I turn on my VPN again and paste the signed copies.

Update: Okay, I have done what I have promised.

Here's this comment below, followed by this one thereafter.


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While I wholeheartedly doubt the alleged efficacy of things such as horizontal gene transfer or
duplication (I think they both just shuffle information that's already there while not producing
anything new), I understand that time and space constraints make that a difficult topic to
address here, but nonetheless the following caught my attention:

"ID is religious but not of a particular religion."

So it's not of any particular religion but it's still religious? Could you elaborate on this?

"To assert "intelligence" logically implies a designer/creator. Call it god, Yahweh, Allah, whatever.
ID requires a designer, which means some supernatural force is required."

I am the intelligence behind this very comment, so by your logic I must be a supernatural entity
right?
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Now the next one:

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Now here I find some things worth disputing:

"Unfortunately, there has yet to be a biological trait or attribute that is irreducibly complex. All
of the core examples from ID can be shown to be sliding scales from more to less complex."

This is probably one of the most common misunderstandings of Behe's arguments - he was
not arguing that IC systems are impossible to evolve any more than it's "impossible" to win
the lottery. It might happen, but this is not something we should treat as a real likelihood.

Are you claiming that not a single cellular system is unable evolve piece-by-piece while
retaining the same basic function or are you rehashing Ken Miller's straw man?

I think a good start in clarifying this dispute can be found here:

http://www.discovery.org/a/3408

...the fact the positive mutation is shown regularly in at least microorganisms..."

Can you give me a few key examples? And how do you define "positive" mutation?

I think Ryan has tackled the rest of what I disagree with on your comment but in the
meantime I look forward to your response to what I had said/asked so far.
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Sunday, February 20, 2011

First Comment on Design Matrix Blog

 A comment on the blog of Mike Gene, someone who sort of inspired me to use the pen name I already have.

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There's definitely something compelling there, though I'm guessing the response by critics will be
along the lines of, "This must be proof evolutionary mechanisms work faster than we thought..."
Popper would be proud at such a defense don't you think?


Admire the fact that you almost single-handedly put front-loading on the discussion table. You're
bound to get your place in history for that alone. Glad to see a maverick voice in the debate over
origins is still active! You've given me hope that doing work under a pen name can wield just as
much influence as going public altogether; I suspect whatever role I might take will work out the
same way.
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